Glyma18g51320 - SoyBase

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Report for Sequence Feature Glyma18g51320

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60245125
stop:	60247910
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02380	AT	Annotation by Michelle Graham. TAIR10: CONSTANS-like 2 \| chr3:487438-488624 REVERSE LENGTH=347	SoyBase	E_val: 9.00E-118	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_B9MSS7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-LIKE 2 n=1 Tax=Glycine max RepID=B9MSS7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N4U7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4U7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g51320

Locus	Gene Symbol	Protein Name
	COL1b	Constans-like 1b

Expression Patterns of Glyma18g51320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51320

Paralog	Evidence	Comments
Glyma08g28370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g278100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51320

Limit To All Plant Sequences

>Glyma18g51320.1   sequence type=CDS   gene model=Glyma18g51320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAGGGCCAAGCAACAACGCCCACGTGGCCGCGCATGTGCGACACGTGCCGCTCCGTCCCCTCCACCGTCTTCTGCCGCTCCCACACCGCCTTTCTCTGCGCCACGTGCGACACTCGCCTCCACGTCTCTCTCACGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCGCCAACAACAACAACAACGACGACGACGACGTTGCTGACGTTGACGACGAAGACGAAACCGCTTCATGGCTCTTGCTCAACCCTATCAAGAGTGCTACTGTCCCTAACACCAATAACAATAACAATAATAACGGGTTCTTGTATAACGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAATTGTAACTCTTGTGGTGATAATAATCACTTCGCTTCAGCTGCTGCTACTACTGATCATTACGCTCAGCACCAACATTTCGCTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGGTTGGAGTTTGACAACTCCAAACCTGCCTTCAGTTACAATGGTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCAATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGATGAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCGACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA

Predicted protein sequences of Glyma18g51320

Limit To All Plant Sequences

>Glyma18g51320.1   sequence type=predicted peptide   gene model=Glyma18g51320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEGQATTPTWPRMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAAANNNNNDDDDVADVDDEDETASWLLLNPIKSATVPNTNNNNNNNGFLYNGEVDEYLDLVDNCNSCGDNNHFASAAATTDHYAQHQHFAGVSQKSYAGDSVVPVQQHQHFQLGLEFDNSKPAFSYNGSVSQSVSVSSMDIGVVPESPMRDVSIAHTRPPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF*

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